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Missing metrics

Last modified on 06-Dec-22

Use a missing metric in a check to surface missing values in the data in your dataset.
Read more about SodaCL metrics and checks in general.

checks for dim_customer
  - missing_count(birthday) = 0
  - missing_percent(gender) < 5%
  - missing_count(birthday) = 0:
      missing regex: (0?[0-9]|1[012])[/](0?[0-9]|[12][0-9]|3[01])[/](0000|(19|20)?\d\d)
  - missing_count(last_name) < 5:
      missing values: [n/a, NA, none]
  - missing_percent(email_address) = 0

Define checks with missing metrics
    Specify missing values or missing regex
    Failed row samples
Optional check configurations
List of missing metrics
List of configuration keys
List of comparison symbols and phrases
Go further

Define checks with missing metrics

In the context of SodaCL check types, you use missing metrics in standard checks. Refer to Standard check types for exhaustive configuration details.

You can use both missing metrics in checks that apply to individual columns in a dataset; you cannot use missing metrics in checks that apply to entire datasets. Identify the column(s) by adding one or more values in the argument between brackets in the check.

  • SodaCL considers NULL as the default value for “missing”.
  • If you wish, you can add a % character to the threshold for a missing_percent metric for improved readability.
  • Known issue: When more than one column is included in a check with a missing metric, as in the example below, Soda executes the check only against the first column listed.
checks for dim_customer:
  - missing_count(birthday, last_name) = 0

You can use missing metrics in checks with fixed thresholds, or relative thresholds, but not change-over-time thresholds. See Checks with fixed thresholds for more detail.

checks for dim_reseller:
# a check with a fixed threshold
  - missing_percent(phone) = 5%
# a check with a relative threshold
  - missing_percent(number_employees) < 5
What is a relative threshold? When it scans a column in your dataset, Soda automatically separates all values in the column into one of three categories:
  • missing
  • invalid
  • valid
Soda then performs two calculations. The sum of the count for all categories in a column is always equal to the total row count for the dataset.

missing count(column name) + invalid count(column name) + valid count(column name) = row count

Similarly, a calculation that uses percentage always adds up to a total of 100 for the column.

missing percent(name) + invalid percent(name) + valid percent(name) = 100

These calculations enable you to write checks that use relative thresholds.

In the example above, the missing values (in this case, NULL) of the number_employees column must be less than five percent of the total row count, or the check fails.

Percentage thresholds are between 0 and 100, not between 0 and 1.

Specify missing values or missing regex

SodaCL considers NULL as the default value for “missing”. In the two check examples above, Soda executes the checks to count the number or values which are NULL, or the percent of values which are NULL relative to the total row count of the column.

However, you can use a nested configuration key:value pair to provide your own definition of a missing value. See List of configuration keys below.

A check that uses a missing metric has four or six mutable parts:

a metric
an argument
a comparison symbol or phrase
a threshold
a configuration key (optional)
a configuration value (optional)


The example below defines two checks. The first check applies to the column last_name. The missing values configuration key specifies that any of the three values in the list exist in a row in that column, Soda recognizes those values as missing values. The check fails if Soda discovers more than five values that match NA, n/a, or '0'.

  • Values in a list must be enclosed in square brackets.
  • Numeric characters in a missing values list must be enclosed in single quotes.

The second check uses a regular expression to define what qualifies as a missing value in the birthday column so that any values that are 00/00/0000 qualify as missing. This check passes if Soda discovers no values that match the pattern defined by the regex.

checks for dim_customer:
  - missing_count(last_name) < 5:
      missing values: [NA, n/a, '0']
  - missing_count(birthday) = 0:
      missing regex: (0?[0-9]|1[012])[/](0?[0-9]|[12][0-9]|3[01])[/](0000|(19|20)?\d\d)

First check:

metric missing_count
argument last_name
comparison symbol <
threshold 5
configuration key missing values
configuration value(s) NA, n/a, '0'

Second check:

metric missing_count
argument birthday
comparison symbol or phrase =
threshold 0
configuration key missing regex
configuration value(s) (0?[0-9]|1[012])[/](0?[0-9]|[12][0-9]|3[01])[/](0000|(19|20)?\d\d)


Failed row samples

Checks with missing metrics automatically collect samples of any failed rows to display Soda Cloud. The default number of failed row samples that Soda collects and displays is 100.

If you wish to limit or broaden the sample size, you can use the samples limit configuration in a check with a missing metric. You can add this configuration to your checks YAML file for Soda Core, or when writing checks as part of an agreement in Soda Cloud.

checks for dim_customer:
  - missing_percent(email_address) < 50:
      samples limit: 2


For security, you can add a configuration to your data source connection details to prevent Soda from collecting failed rows samples from specific columns that contain sensitive data. Refer to Disable failed rows sampling for specific columns.

To review the failed rows in Soda Cloud, navigate to the Checks dashboard, then click the row for a check for missing values. Examine failed rows in the Failed rows tab; see Examine failed rows for further details.

failed-missing-count


Optional check configurations

Supported Configuration Documentation
Define a name for a check with missing metrics; see example. Customize check names
Add an identity to a check. Add a check identity
Define alert configurations to specify warn and fail thresholds; see example. Add alert configurations
Apply an in-check filter to return results for a specific portion of the data in your dataset; see example. Add an in-check filter to a check
Use quotes when identifying dataset or column names; see example.
Note that the type of quotes you use must match that which your data source uses. For example, BigQuery uses a backtick (`) as a quotation mark.
Use quotes in a check
  Use wildcard characters ( % or * ) in values in the check. -
Use for each to apply checks with missing metrics to multiple datasets in one scan; see example. Apply checks to multiple datasets
Apply a dataset filter to partition data during a scan; see example. Scan a portion of your dataset

Example with check name

checks for dim_customer:
  - missing_count(birthday) = 0:
      missing regex: (0?[0-9]|1[012])[/](0?[0-9]|[12][0-9]|3[01])[/](0000|(19|20)?\d\d)
      name: Date entered as 00/00/0000

Example with alert configuration

checks for dim_customer:
  - missing_percent(marital_status):
      valid length: 1
      warn: when < 5
      fail: when >= 5  

Example with in-check filter

checks for dim_customer:
  - missing_count(first_name) < 5:
      missing values: [NA, none]
      filter: number_children_at_home > 2

Example with quotes

checks for dim_reseller:
  - missing_percent("phone", "address_line1") = 0

Example with for each

for each dataset T:
  datasets:
    - dim_product
    - dim_product_%
  checks:
    - missing_count(product_line) = 0

Example with dataset filter

filter CUSTOMERS [daily]:
  where: TIMESTAMP '{ts_start}' <= "ts" AND "ts" < TIMESTAMP '${ts_end}'

checks for CUSTOMERS [daily]:
  - missing_count(user_id) = 0


List of missing metrics

Metric Column config keys Description Supported data type Supported data sources
missing_count missing regex
missing values
The number of rows in a column that contain NULL values and any other user-defined values that qualify as missing. number, text, time Athena
Redshift
Apache Spark DataFrames
Big Query
DB2
SQL Server
PostgreSQL
Snowflake
missing_percent missing regex
missing values
The percentage of rows in a column, relative to the total row count, that contain NULL values and any other user-defined values that qualify as missing. number, text, time Athena
Redshift
Apache Spark DataFrames
Big Query
DB2
SQL Server
PostgreSQL
Snowflake

List of configuration keys

The column configuration key:value pair defines what SodaCL ought to consider as missing values.

Column config key Description Values
missing regex Specifies a regular expression to define your own custom missing values. regex, no forward slash delimiters, string only
missing values Specifies the values that Soda is to consider missing. Numeric characters in a valid values list must be enclosed in single quotes. values in a list

List of comparison symbols and phrases

 = 
 < 
 >
 <=
 >=
 !=
 <> 
 between 
 not between 

Go further


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Last modified on 06-Dec-22